hypernets_processor.main.sequence_processor_main module

Module with main to run sequence file processing chain

hypernets_processor.main.sequence_processor_main.get_target_sequences(context, to_archive)

Returns paths of sequences to process, checking against previous archived data if adding to archive

Parameters:

• context (hypernets_processor.context.Context) – processor context

• to_archive (bool) – switch for if to add processed data to data archive

hypernets_processor.main.sequence_processor_main.main(processor_config, job_config, to_archive, parallel=None)

Main function to run processing chain for sequence files

Parameters:

• processor_config (configparser.RawConfigParser) – processor configuration file path

• job_config (configparser.RawConfigParser) – job configuration file path

• to_archive (bool) – switch for if to add processed data to data archive

hypernets_processor.main.sequence_processor_main.run_sequence(inputs)